ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIR168
source: microPC, original name: miR168
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGA mismatches: 3 bulges: 0 |
pre-miRNA
TCGCTTGGTGCAGGTCGGGAACTGATTAGCTTCGCTTGCATATGTACGTATATGTTTTCTCCTTATTATGCTAGATGGCAAGTCTTGATTGGTTGAGATC
GGACAGAAGCGAATTGGATCCCGCCTTGCATCAACTGA
dot-bracket secondary structure
(((.((((((((((.(((((.(..(((.(((((....(((((((....)))))))....(((......((((....)))).((((..(....)..)))).
)))..))))).)))..).))))).)))))))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCGCTTGGTGCAGGTCGGGAACTGATTAGCTTCGCTTGCATATGTACGTATATGTTTTCTCCTTATTATGCTAGATGGCAAGTCTTGATTGGTTGAGATC
GGACAGAAGCGAATTGGATCCCGCCTTGCATCAACTGA
dot-bracket secondary structure
(((.((((((((((.(((((.(..(((.(((((....(((((((....)))))))....(((......((((....)))).((((..(....)..)))).
)))..))))).)))..).))))).)))))))))).)))
SIMILARITIES| miRBase ptc-MIR168a: 0.0000000001 PMRD pts-miR168b: 0.0000000001 microPC miR168: 2e-74 | UniProt no hits RFAM MIR168: 0.000000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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