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ABOUT THIS RECORD

ID: MNEST045002
species: Manihot esculenta
source: microPC, original name: miR159

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCT

miRNA*
AGCTCCTTGAAGTCCAATAG

mismatches: 3
bulges: 0

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pre-miRNA
GGAGCTCCTTGAAGTCCAATAGAGGATCTTGCTGGGTAGATTGAGCTGCTGAGCTATGGATCCCACAGCCCTATCTCATAATAAAGACTCTAGTCTTCTT
GGATAGGCTTGTGGCTTGCATATCTCAGGAGCTTCATTACCTCTTATGTTAGATCCTTGTTTGGATTGAAGGGAGCTCT


dot-bracket secondary structure
((((((((((..(((((((..((((((((.((.((((((...(((((.(((((.((((.(..((((((.((((((.((.....(((((....)))))..)
))))))).))))))..).)))).))))).)))))..)))))).....)).))))))))..)))))))..))))))))))



SIMILARITIES
miRBase rco-MIR159: 2e-47

PMRD vvi-miR159c: 1e-29

microPC miR159: 7e-99
UniProt no hits

RFAM MIR159: 3e-46

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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