ABOUT THIS RECORDspecies: Zea mays
source: microPC, original name: miR171
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATAT miRNA* GTTGGCATGGCTCAATCAAC mismatches: 0 bulges: 0 |
pre-miRNA
ATGTTGGCATGGCTCAATCAACTCGCCGGCCGCGGGTGGCTTATAGCTTAATTCTGCGCATTCGATCGAGGTGCGGGCGCAGTGTTTAATTGATTGAGCC
GTGCCAATAT
dot-bracket secondary structure
(((((((((((((((((((((((((((.((((((((.(((.....)))....))))))..(((....)))..)).)))).))).......))))))))))
))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATGTTGGCATGGCTCAATCAACTCGCCGGCCGCGGGTGGCTTATAGCTTAATTCTGCGCATTCGATCGAGGTGCGGGCGCAGTGTTTAATTGATTGAGCC
GTGCCAATAT
dot-bracket secondary structure
(((((((((((((((((((((((((((.((((((((.(((.....)))....))))))..(((....)))..)).)))).))).......))))))))))
))))))))))
SIMILARITIES| miRBase zma-MIR171f: 6e-58 PMRD zma-miR171f: 6e-58 microPC miR171: 6e-58 | UniProt no hits RFAM MIR171_1: 1e-56 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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