ABOUT THIS RECORDspecies: Citrus clementina
source: microPC, original name: miR846
Taxonomy by NCBI:
Citrus clementina Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAATGAAGTGCTTGAATT miRNA* TTTTCCACTTCTCAATTTCCAG mismatches: 3 bulges: 4 |
pre-miRNA
AATTTTCCACTTCTCAATTTCCAGGGCTTAATTTCTTGATCCTTCCGTTATTTTGATTCCTAGATTTTGGAAGGCTTGAATATAAGATTGTATGCATGAA
ATGAAGTGCTTGAATT
dot-bracket secondary structure
(((((..((((((...(((((....((.((((((.(..(.(((((((..((((........))))..))))))).)..).....))))))...))..)))
))))))))...)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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AATTTTCCACTTCTCAATTTCCAGGGCTTAATTTCTTGATCCTTCCGTTATTTTGATTCCTAGATTTTGGAAGGCTTGAATATAAGATTGTATGCATGAA
ATGAAGTGCTTGAATT
dot-bracket secondary structure
(((((..((((((...(((((....((.((((((.(..(.(((((((..((((........))))..))))))).)..).....))))))...))..)))
))))))))...)))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record
