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ABOUT THIS RECORD

ID: MNEST045020
species: Populus trichocarpa x Populus deltoides
miRNA family: MIR393
source: microPC, original name: miR393

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCAAAGGGATCGCATTGATC

miRNA*
 TCATGCGATCCCTTAGGA

mismatches: 1
bulges: 1
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pre-miRNA
 TCCAAAGGGATCGCATTGATCTAATGACTCTCGATGTCTAAATCATATTAATGTTTAGTTTTTTCGTTGGATCATGCGATCCCTTAGGA

dot-bracket secondary structure
(((.((((((((((((.((((((((((.....((...(((((.(((....))))))))...)))))))))))))))))))))))).)))


SIMILARITIES
miRBase ptc-MIR393c: 2e-45

PMRD ptc-miR393c: 2e-45

microPC miR393: 2e-45		UniProt no hits

RFAM no hits

Identical with: ptc-MIR393c from miRBase (MNEST041419)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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