ABOUT THIS RECORDspecies: Pinus pinaster
source: microPC, original name: miR482
Taxonomy by NCBI:
Pinus pinaster Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCCCTACTCCTCCCATT miRNA* TGGAAGGATAGGGTAAGACT mismatches: 3 bulges: 2 |
pre-miRNA
TTGGAAGGATAGGGTAAGACTAGGGTTAAGCAGAAACTCTGCTTCATTAATTCTCTGCTCCAGTCTTCCCTACTCCTCCCATT
dot-bracket secondary structure
)(((.(((((((((.((((((.((((.((((((.....))))))............)))).))))))))))).)))).)))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTGGAAGGATAGGGTAAGACTAGGGTTAAGCAGAAACTCTGCTTCATTAATTCTCTGCTCCAGTCTTCCCTACTCCTCCCATT
dot-bracket secondary structure
)(((.(((((((((.((((((.((((.((((((.....))))))............)))).))))))))))).)))).)))..
SIMILARITIES| miRBase pta-MIR482b: 2.0E-41 PMRD pta-miR482b: 2.0E-41 microPC miR482: 2.0E-41 | UniProt no hits RFAM no hits |
Identical with: pta-miR482b from PMRD (MNEST051568), pta-MIR482b from miRBase |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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