miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST045031
species: Saccharum officinarum
miRNA family: MIR167
source: microPC, original name: miR167

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTG

miRNA*
GGTCATGCTGTAGTTTCA

mismatches: 1
bulges: 1

View larger
pre-miRNA
TGAAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCTGACTGTCACCGATCCATGAATCCAGGATGAG
GGGAGGGAAGAAAGAGGGATAATGAGCATCAGGTCATGCTGTAGTTTCA


dot-bracket secondary structure
.((((((((.((((((((((((((((.((((((....)))))).)).......(((((..(((((((((...((((...(((......)))...)))).)
))))))))....))))).........)))))))))))))))))))))).



SIMILARITIES
miRBase sof-MIR167a: 5e-81

PMRD sof-miR167a: 5e-81

microPC miR167: 5e-81
UniProt no hits

RFAM MIR167_1: 3e-24

Identical with: sof-miR167a from PMRD (MNEST054634)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record





Liczniki na strone;