ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR167
source: microPC, original name: miR167
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GGTCATGCTGTAGTTTCA mismatches: 1 bulges: 1 |
pre-miRNA
TGAAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCTGACTGTCACCGATCCATGAATCCAGGATGAG
GGGAGGGAAGAAAGAGGGATAATGAGCATCAGGTCATGCTGTAGTTTCA
dot-bracket secondary structure
.((((((((.((((((((((((((((.((((((....)))))).)).......(((((..(((((((((...((((...(((......)))...)))).)
))))))))....))))).........)))))))))))))))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGAAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCTGACTGTCACCGATCCATGAATCCAGGATGAG
GGGAGGGAAGAAAGAGGGATAATGAGCATCAGGTCATGCTGTAGTTTCA
dot-bracket secondary structure
.((((((((.((((((((((((((((.((((((....)))))).)).......(((((..(((((((((...((((...(((......)))...)))).)
))))))))....))))).........)))))))))))))))))))))).
SIMILARITIES| miRBase sof-MIR167a: 5e-81 PMRD sof-miR167a: 5e-81 microPC miR167: 5e-81 | UniProt no hits RFAM MIR167_1: 3e-24 |
Identical with: sof-miR167a from PMRD (MNEST054634) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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