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ABOUT THIS RECORD

ID: MNEST045035
species: Saccharum officinarum
miRNA family: MIR528
source: microPC, original name: miR528

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGAAGGGGCATGCAGAGGAG

miRNA*
 ATGCTACCCCTCGCTGGCTCTCCTGTGCCTGCCTCTTCCA

mismatches: 3
bulges: 21
View larger
pre-miRNA
 TGGAAGGGGCATGCAGAGGAGCACGAGGCTTGGCTAAAAGCCGACCTGTGCTATGCTACCCCTCGCTGGCTCTCCTGTGCCTGCCTCTTCCA

dot-bracket secondary structure
.((((((((((.(((.((((((((.(((.(((((.....))))))))))))...((((........))))..)))).))).)))))))))).


SIMILARITIES
miRBase ssp-MIR528: 3e-47

PMRD osa-miR528: 0.000004

microPC miR528: 8e-17		UniProt no hits

RFAM no hits

Identical with: ssp-MIR528 from miRBase (MNEST042481)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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