ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR809
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAATGTGGGAAATGCTAGAAT miRNA* TCTAGTATTTTCCACATTAACATC mismatches: 0 bulges: 2 |
pre-miRNA
ATTCTAGTATTTTCCACATTAACATCGATGTATCTAGATTCAGTTGATATCAGGATGAATGTGGGAAATGCTAGAAT
dot-bracket secondary structure
((((((((((((((((((((..((((..((((((...........)))).)).))))))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATTCTAGTATTTTCCACATTAACATCGATGTATCTAGATTCAGTTGATATCAGGATGAATGTGGGAAATGCTAGAAT
dot-bracket secondary structure
((((((((((((((((((((..((((..((((((...........)))).)).))))))))))))))))))))))))
SIMILARITIES| miRBase osa-MIR809d: 0.000003 PMRD osa-miRf11050-akr: 0.000003 microPC miR809: 2e-38 | UniProt no hits RFAM MIR1122: 0.0000003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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