ABOUT THIS RECORDspecies: Triticum aestivum
source: microPC, original name: miR1135
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCGACGAGTAATTCGGAACGGA miRNA* CGTTTCAAATTACTCGTCTCAGA mismatches: 2 bulges: 0 |
pre-miRNA
TCCGTTTCAAATTACTCGTCTCAGAAATGGATGTATCTAGAACTAAAATACATCTAGATACATCCATTTTTGCGACGAGTAATTCGGAACGGA
dot-bracket secondary structure
((((((((.(((((((((((.((((((((((((((((((((...........)))))))))))))))))))).))))))))))).))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCCGTTTCAAATTACTCGTCTCAGAAATGGATGTATCTAGAACTAAAATACATCTAGATACATCCATTTTTGCGACGAGTAATTCGGAACGGA
dot-bracket secondary structure
((((((((.(((((((((((.((((((((((((((((((((...........)))))))))))))))))))).))))))))))).))))))))
SIMILARITIES| miRBase tae-MIR1136: 2e-33 PMRD tae-miR1136: 2e-33 microPC miR1135: 2e-26 | UniProt no hits RFAM MIR1122: 1e-34 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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