ABOUT THIS RECORDspecies: Hordeum vulgare
source: microPC, original name: miR444
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGTGGCTTTCTTGCAAGT miRNA* TTGTGGGGAAGGCACAAGT mismatches: 3 bulges: 0 |
pre-miRNA
ACTTGTGGGGAAGGCACAAGTAGGACACCAACATTACCTGCAAGCAAGACGCAAAATTAATAGAACATCACCATACTTGTGGCTTTCTTGCAAGT
dot-bracket secondary structure
(((((..((((((.((((((((((...................((.....))..........(.....).)).)))))))).))))))..)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ACTTGTGGGGAAGGCACAAGTAGGACACCAACATTACCTGCAAGCAAGACGCAAAATTAATAGAACATCACCATACTTGTGGCTTTCTTGCAAGT
dot-bracket secondary structure
(((((..((((((.((((((((((...................((.....))..........(.....).)).)))))))).))))))..)))))
SIMILARITIES| miRBase hvu-MIR444a: 2e-42 PMRD tae-miR444: 6e-30 microPC miR444: 5e-49 | UniProt no hits RFAM MIR444: 9e-48 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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