ABOUT THIS RECORDspecies: Triticum aestivum
source: microPC, original name: miR1133
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATACTCCCTCCGTCCGAAA miRNA* CCGGACCGAGGGAGTAT mismatches: 2 bulges: 0 |
pre-miRNA
ATACTCCCTCCGTCCGAAAATACTTGTCATCGAAATAGATGTATCTANATTTATTTTAGTTTTACGATACATCCATTTTCATCCCTTTTGATGACAAGTA
TTTCCGGACCGAGGGAGTAT
dot-bracket secondary structure
((((((((((.(((((.((((((((((((((((((..((((((((....................))))))))............)))))))))))))))
))).))))).))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
degradome data
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ATACTCCCTCCGTCCGAAAATACTTGTCATCGAAATAGATGTATCTANATTTATTTTAGTTTTACGATACATCCATTTTCATCCCTTTTGATGACAAGTA
TTTCCGGACCGAGGGAGTAT
dot-bracket secondary structure
((((((((((.(((((.((((((((((((((((((..((((((((....................))))))))............)))))))))))))))
))).))))).))))))))))
SIMILARITIES| miRBase tae-MIR1128: 0.0000000001 PMRD ata-miR1122: 0.00000000000003 microPC miR1133: 5e-62 | UniProt no hits RFAM MIR1122: 3e-26 |
MOREmiRNEST target predictions
non-miRNEST targets: none
degradome data
download this record
