ABOUT THIS RECORDspecies: Ricinus communis
source: microPC, original name: miR160
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCC miRNA* CGTATGAGGAGCCATGCA mismatches: 4 bulges: 0 |
pre-miRNA
TGCCTGGCTCCCTGTATGCCATTTGCAGAGCCCACCGGAGCATCGATGGCCTCCGTGGATGGCGTATGAGGAGCCATGCA
dot-bracket secondary structure
.((.(((((((..((((((((((..(.(((.(((.((......)).))).))).)..))))))))))..))))))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGCCTGGCTCCCTGTATGCCATTTGCAGAGCCCACCGGAGCATCGATGGCCTCCGTGGATGGCGTATGAGGAGCCATGCA
dot-bracket secondary structure
.((.(((((((..((((((((((..(.(((.(((.((......)).))).))).)..))))))))))..))))))).)).
SIMILARITIES| miRBase vvi-MIR160e: 5e-33 PMRD vvi-miR160f: 5e-33 microPC miR160: 4e-40 | UniProt no hits RFAM mir-160: 9e-32 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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