ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR160
source: microPC, original name: miR160
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTACAGAGTAGTCAAGCA mismatches: 3 bulges: 1 |
pre-miRNA
TGCCTGGCTCCCTGTATGCCACAAGTAAATACCGATCTCATTATGAAATCGGACACTAGTGGCGTACAGAGTAGTCAAGCA
dot-bracket secondary structure
.((.(((((.((((((((((((.(((.....(((((.((.....)).)))))..))).))))))))))).).))))).)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGCCTGGCTCCCTGTATGCCACAAGTAAATACCGATCTCATTATGAAATCGGACACTAGTGGCGTACAGAGTAGTCAAGCA
dot-bracket secondary structure
.((.(((((.((((((((((((.(((.....(((((.((.....)).)))))..))).))))))))))).).))))).)).
SIMILARITIES| miRBase aly-MIR160b: 7e-17 PMRD ath-miRf10238-akr: 0.00000000000002 microPC miR160: 9e-41 | UniProt no hits RFAM mir-160: 2e-39 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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