ABOUT THIS RECORDspecies: Lactuca sativa
source: microPC, original name: miR319
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGATTGAAGGGAGCTC miRNA* GCTCCTTGAAGTCCAATA mismatches: 2 bulges: 0 |
pre-miRNA
GAGCTCCTTGAAGTCCAATAGAGGATCTGAGTGGGAATATCGAGCTGCTGGTCTATGGACCCCTCAAGTCCTATCTTTGTTGTTGTATAGGCTTTGTGGC
TTGCATACGCCAGGAGATTCATTATCCTTTTTCTGATCCTTTTTTTGGATTGAAGGGAGCTC
dot-bracket secondary structure
(((((((((..(((((((.((((((((.(((.((((.((..(((((.(((((.((((.(..((.((((.((((((.........).))))).)))).)).
.).)))).))))).)).)))..))))))..))).))))))))..)))))))..)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAGCTCCTTGAAGTCCAATAGAGGATCTGAGTGGGAATATCGAGCTGCTGGTCTATGGACCCCTCAAGTCCTATCTTTGTTGTTGTATAGGCTTTGTGGC
TTGCATACGCCAGGAGATTCATTATCCTTTTTCTGATCCTTTTTTTGGATTGAAGGGAGCTC
dot-bracket secondary structure
(((((((((..(((((((.((((((((.(((.((((.((..(((((.(((((.((((.(..((.((((.((((((.........).))))).)))).)).
.).)))).))))).)).)))..))))))..))).))))))))..)))))))..)))))))))
SIMILARITIES| miRBase rco-MIR159: 0.000000008 PMRD vvi-miR159c: 0.0000001 microPC miR159: 3e-76 | UniProt no hits RFAM MIR159: 0.0000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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