ABOUT THIS RECORDspecies: Cichorium endivia
miRNA family: MIR393
source: microPC, original name: miR393
Taxonomy by NCBI:
Cichorium endivia Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATCGCATTGATC miRNA* TCATGCGATCTCTTTGGA mismatches: 0 bulges: 1 |
pre-miRNA
TCCAAAGGGATCGCATTGATCCGGTTTATCAATCGATTCGAGTTTGATTCATTCATCTATCATATCCATGGAAGCAGCTGCAAATTTTTTTATCCAATTT
GATAATTTGGATCATGCGATCTCTTTGGA
dot-bracket secondary structure
((((((((((((((((.(((((((.(((((((..(((..(((((((.........(((((.......)))))........)))))))....)))....))
))))).)))))))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCCAAAGGGATCGCATTGATCCGGTTTATCAATCGATTCGAGTTTGATTCATTCATCTATCATATCCATGGAAGCAGCTGCAAATTTTTTTATCCAATTT
GATAATTTGGATCATGCGATCTCTTTGGA
dot-bracket secondary structure
((((((((((((((((.(((((((.(((((((..(((..(((((((.........(((((.......)))))........)))))))....)))....))
))))).)))))))))))))))))))))))
SIMILARITIES| miRBase sbi-MIR393: 0.000006 PMRD sbi-miR393: 0.000006 microPC miR393: 1e-56 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
