ABOUT THIS RECORDspecies: Nicotiana tabacum
source: microPC, original name: miR160
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGCATGCC miRNA* CGTGCGAGGAGCCAAGCA mismatches: 3 bulges: 0 |
pre-miRNA
TGCCTGGCTCCCTGCATGCCACACGCTTTCACCAATCCGCGGGTTCTTTGATTGGCTGATCAGTGGGTGGCGTGCGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((.((((((((((.((((.(((((((((............)))))).)))..)))).)))))))))).))))))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGCCTGGCTCCCTGCATGCCACACGCTTTCACCAATCCGCGGGTTCTTTGATTGGCTGATCAGTGGGTGGCGTGCGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((.((((((((((.((((.(((((((((............)))))).)))..)))).)))))))))).))))))).)).
SIMILARITIES| miRBase vvi-MIR160c: 0.000001 PMRD vvi-miR160c: 0.000001 microPC miR160: 7e-45 | UniProt no hits RFAM mir-160: 0.00002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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