ABOUT THIS RECORDspecies: Mesembryanthemum crystallinum
miRNA family: MIR396
source: microPC, original name: miR396
Taxonomy by NCBI:
Mesembryanthemum crystallinum Mesembryanthemum Aizoaceae Caryophyllales core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACT miRNA* TTCAAGAAAGCTGTGGGA mismatches: 0 bulges: 0 |
pre-miRNA
TTCCACAGCTTTCTTGAACTTTCCGGTTCTTTTCTTCTTTTTTTTTCTTTCTAGTGAGAAACAAACCATCATTGGGAAAGTTCAAGAAAGCTGTGGGA
dot-bracket secondary structure
((((((((((((((((((((((((((((..((((((((..............)).))))))..)))).......))))))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTCCACAGCTTTCTTGAACTTTCCGGTTCTTTTCTTCTTTTTTTTTCTTTCTAGTGAGAAACAAACCATCATTGGGAAAGTTCAAGAAAGCTGTGGGA
dot-bracket secondary structure
((((((((((((((((((((((((((((..((((((((..............)).))))))..)))).......))))))))))))))))))))))))
SIMILARITIES| miRBase tcc-MIR396c: 0.000005 PMRD bna-miR396a: 0.000005 microPC miR396: 1e-34 | UniProt no hits RFAM MIR396: 0.00008 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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