ABOUT THIS RECORDspecies: Fragaria vesca
source: microPC, original name: miR398
Taxonomy by NCBI:
Fragaria vesca Fragaria Potentilleae Rosodae Rosoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGTTCTCAGGTCGCCCCTG miRNA* GGAGCGACCTGAGACCACATGT mismatches: 2 bulges: 2 |
pre-miRNA
AGGAGCGACCTGAGACCACATGTGTGCACCCTCACCACACTCCAAAGTGAGAGTACATAACCACGTGTTCTCAGGTCGCCCCTG
dot-bracket secondary structure
(((.(((((((((((..(((((((((.((.(((((...........))))).)).))....)))))))))))))))))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGAGCGACCTGAGACCACATGTGTGCACCCTCACCACACTCCAAAGTGAGAGTACATAACCACGTGTTCTCAGGTCGCCCCTG
dot-bracket secondary structure
(((.(((((((((((..(((((((((.((.(((((...........))))).)).))....)))))))))))))))))).))).
SIMILARITIES| miRBase osa-MIR398b: 0.0002 PMRD vvi-miR398c: 0.0002 microPC miR398: 6e-42 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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