ABOUT THIS RECORDspecies: Triticum aestivum
source: microPC, original name: miR1128
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTCCGAAA miRNA* CCGGACAGAGGGAGTA mismatches: 2 bulges: 0 |
pre-miRNA
TACTCCCTCCGTCCGAAAATACTTGTCGAAGAAATGGATAAAAATGAATGTATCTAGAACCAAAATACATCTAGATACATCTATTCCTCCGACAATTTCC
GGACAGAGGGAGTA
dot-bracket secondary structure
(((((((((.(((((.((((...(((((.((.((((((..........((((((((((...........)))))))))))))))).)).))))))))).)
)))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
TACTCCCTCCGTCCGAAAATACTTGTCGAAGAAATGGATAAAAATGAATGTATCTAGAACCAAAATACATCTAGATACATCTATTCCTCCGACAATTTCC
GGACAGAGGGAGTA
dot-bracket secondary structure
(((((((((.(((((.((((...(((((.((.((((((..........((((((((((...........)))))))))))))))).)).))))))))).)
)))).)))))))))
SIMILARITIES| miRBase tae-MIR1128: 4e-16 PMRD ata-miR1122: 2e-27 microPC miR1128: 3e-60 | UniProt no hits RFAM MIR1122: 2e-33 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
