ABOUT THIS RECORDspecies: Nicotiana benthamiana
source: microPC, original name: miR398
Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCT miRNA* GGGCAACCTGAGATCACATA mismatches: 2 bulges: 0 |
pre-miRNA
AGGGGCAACCTGAGATCACATATTGTCATTTTTCTTTAGTTGTTGAGTCTGGTTCAATATCTCACTATGTGTTCTCAGGTCGCCCCT
dot-bracket secondary structure
((((((.((((((((.((((((.((............((.(((((((.....))))))).)))).)))))).)))))))).))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGGGCAACCTGAGATCACATATTGTCATTTTTCTTTAGTTGTTGAGTCTGGTTCAATATCTCACTATGTGTTCTCAGGTCGCCCCT
dot-bracket secondary structure
((((((.((((((((.((((((.((............((.(((((((.....))))))).)))).)))))).)))))))).))))))
SIMILARITIES| miRBase bdi-MIR398c: 0.00006 PMRD vvi-miR398c: 0.00006 microPC miR398: 3e-44 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
