ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR156
source: microPC, original name: miR156
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCACTCTCTCTATGTCA mismatches: 3 bulges: 1 |
pre-miRNA
TGACAGAAGAGAGTGAGCACACAAAGGGGGAATTGTATAAAATTAAGTTTGTTGTATATAGTTGCTTTTGCGTGCTCACTCTCTCTATGTCA
dot-bracket secondary structure
.((((..(((((((((((((.((((((...(((((((((.(((.......))).))))))))).)))))).)))))))))))))...)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGACAGAAGAGAGTGAGCACACAAAGGGGGAATTGTATAAAATTAAGTTTGTTGTATATAGTTGCTTTTGCGTGCTCACTCTCTCTATGTCA
dot-bracket secondary structure
.((((..(((((((((((((.((((((...(((((((((.(((.......))).))))))))).)))))).)))))))))))))...)))).
SIMILARITIES| miRBase ath-MIR156d: 1e-18 PMRD ath-miRf10567-akr: 1e-18 microPC miR156: 3e-47 | UniProt no hits RFAM mir-156: 2e-17 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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