ABOUT THIS RECORDspecies: Cycas rumphii
source: microPC, original name: miR167
Taxonomy by NCBI:
Cycas rumphii Cycas Cycadaceae Cycadales Cycadopsida Cycadophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCT miRNA* ATCATGTGGCAGTCTCA mismatches: 3 bulges: 1 |
pre-miRNA
ATGAAGCTGCCAGCATGATCTGGTTAATATTGCTCTCGCCAGTTGCTTTTGGGTACCAGATCATGTGGCAGTCTCA
dot-bracket secondary structure
).((..((((((.(((((((((((...((..((...(....)..))...))...)))))))))))))))))..)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATGAAGCTGCCAGCATGATCTGGTTAATATTGCTCTCGCCAGTTGCTTTTGGGTACCAGATCATGTGGCAGTCTCA
dot-bracket secondary structure
).((..((((((.(((((((((((...((..((...(....)..))...))...)))))))))))))))))..)).
SIMILARITIES| miRBase zma-MIR167g: 2.0E-7 PMRD zma-miR167g: 2.0E-7 microPC miR167: 3.0E-37 | UniProt no hits RFAM 1MIR167_1: 4.0E-6 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
