ABOUT THIS RECORDspecies: Pinus pinaster
source: microPC, original name: miR482
Taxonomy by NCBI:
Pinus pinaster Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTACTCCTCCCATTCC miRNA* TGTGGAAGGATAGGGT mismatches: 2 bulges: 1 |
pre-miRNA
CGGTGTGGAAGGATAGGGTAAGACTAGGGTTAAGCAGAAACTCTGCTTCATTAATTCTCTGCTCCAGTCTTCCCTACTCCTCCCATTCC
dot-bracket secondary structure
)((.((((.(((((((((.((((((.((((.((((((.....))))))............)))).))))))))))).)))).)))).))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CGGTGTGGAAGGATAGGGTAAGACTAGGGTTAAGCAGAAACTCTGCTTCATTAATTCTCTGCTCCAGTCTTCCCTACTCCTCCCATTCC
dot-bracket secondary structure
)((.((((.(((((((((.((((((.((((.((((((.....))))))............)))).))))))))))).)))).)))).))
SIMILARITIES| miRBase pta-MIR482b: 7.0E-45 PMRD pta-miR482b: 7.0E-45 microPC miR482: 3.0E-41 | UniProt no hits RFAM no hits |
Identical with: pta-miR482b from PMRD (MNEST051568), pta-MIR482b from miRBase |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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