ABOUT THIS RECORDspecies: Populus nigra
source: microPC, original name: miR319
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTC miRNA* GCTCCTTGAAGTCCAATAG mismatches: 3 bulges: 0 |
pre-miRNA
GAGCTCCTTGAAGTCCAATAGAAGCTCCTGCTGGGTAGATCGAGCTGCTGAGCTATGAATCCCACAGCCCTATCACCATCAGTCATTTTGATGGGCCTGC
GGCTTGCATATCTCAGGAGCTTTATTACCTAATGTTAGATCTTTTTTTGGATTGAAGGGAGCTC
dot-bracket secondary structure
(((((((((..(((((((.(((((.((..(((((((((...(((((.(((((.((((....((.(((.(((((((.............))))))).))).
))....)))).))))).)))))..)))))))..))..)).))))).)))))))..)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAGCTCCTTGAAGTCCAATAGAAGCTCCTGCTGGGTAGATCGAGCTGCTGAGCTATGAATCCCACAGCCCTATCACCATCAGTCATTTTGATGGGCCTGC
GGCTTGCATATCTCAGGAGCTTTATTACCTAATGTTAGATCTTTTTTTGGATTGAAGGGAGCTC
dot-bracket secondary structure
(((((((((..(((((((.(((((.((..(((((((((...(((((.(((((.((((....((.(((.(((((((.............))))))).))).
))....)))).))))).)))))..)))))))..))..)).))))).)))))))..)))))))))
SIMILARITIES| miRBase ptc-MIR159b: 2e-77 PMRD ptc-miR159b: 2e-77 microPC miR159: 2e-77 | UniProt no hits RFAM MIR159: 4e-76 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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