miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST045116
species: Cichorium intybus
source: microPC, original name: miR166

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCC

miRNA*
 GGATGTTGTCTGGCTCCAGGCC

mismatches: 3
bulges: 2
View larger
pre-miRNA
 GAGGGATGTTGTCTGGCTCCAGGCCACTAGAGAACCTTATGGATCTCTCGATCTATGGATCTCTTTTCTCTCTATATATATTACATAATATATATGTATA
TCATCATAGTCAACGCATCTGATTTCATTGCCTTCGTTGACTAGAGATGGTGATAGATCATTCTTGATCTGGTGTCGTCGGACCAGGCTTCATTCCC

dot-bracket secondary structure
..((((((..((((((.(((.(((.((.(((((.((..(((((((....))))))))).)))))........((((((((((....))))))))))..((
(((((.(((((((((((..((....)).)))....))))))))..))))))).(((((((....)))))))..)).))))))))))))..)))))).


SIMILARITIES
miRBase vvi-MIR166e: 0.00000001

PMRD vvi-miR166e: 0.00000001

microPC miR166: 3e-49		UniProt no hits

RFAM mir-166: 0.0000002

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;