ABOUT THIS RECORDspecies: Populus nigra
source: microPC, original name: miR168
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGA miRNA* CCGCCTTGCATCAACTGA mismatches: 2 bulges: 0 |
pre-miRNA
TCGCTTGGTGCAGGTCGGGAACTGATTCGGCGATTTGATTGCCAGATGGCTCGACATGACTGGTTGTTGTGGAAAAAGAAAAGGAAGGAAATAGGAAAAA
AAAAACAAAGAATAGCGAATTGGATCCCGCCTTGCATCAACTGA
dot-bracket secondary structure
(((.((((((((((.(((((.(..(((((.(..((((...(((....)))....((..((.....))..)).............................
.....)))).....))))))..).))))).)))))))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCGCTTGGTGCAGGTCGGGAACTGATTCGGCGATTTGATTGCCAGATGGCTCGACATGACTGGTTGTTGTGGAAAAAGAAAAGGAAGGAAATAGGAAAAA
AAAAACAAAGAATAGCGAATTGGATCCCGCCTTGCATCAACTGA
dot-bracket secondary structure
(((.((((((((((.(((((.(..(((((.(..((((...(((....)))....((..((.....))..)).............................
.....)))).....))))))..).))))).)))))))))).)))
SIMILARITIES| miRBase ptc-MIR168a: 8e-55 PMRD ptc-miR168a: 8e-55 microPC miR168: 4e-60 | UniProt no hits RFAM MIR168: 2e-53 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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