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ABOUT THIS RECORD
ID:
MNEST045121
species:
Nicotiana tabacum
source:
microPC, original name:
miR171
Taxonomy by NCBI:
Nicotiana tabacum
Nicotiana
Nicotianeae
Nicotianoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGATTGAGCCGCGCCAATATC
miRNA*
TGTTGGTGAGGTTCAATCCGA
mismatches:
2
bulges:
0
View larger
pre-miRNA
GA
TGTTGGTGAGGTTCAATCCGA
AGACGAGTTTACGTTTTGTTTTCGTAAAGAACGATCTC
AGATTGAGCCGCGCCAATATC
dot-bracket secondary structure
((
((((((((.((((((((((((
(((((((.......))))))))))....((......))
.))))))))).))))))))))
SIMILARITIES
miRBase
sly-MIR171d
:
5e-27
PMRD
sly-miR171d
:
5e-27
microPC
miR171
:
2e-41
UniProt
no hits
RFAM
MIR171_1: 9e-26
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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