ABOUT THIS RECORDspecies: Carica papaya
source: microPC, original name: miR390
Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGCTATCCATCCTGAGTTTC miRNA* AGCTCAGGAGGGATAGCGCC mismatches: 2 bulges: 0 |
pre-miRNA
CAAGCTCAGGAGGGATAGCGCCATGGCGGGTCTTGAATCTTGATCTTCATTTGCGCTATCCATCCTGAGTTTC
dot-bracket secondary structure
)((((((((((.(((((((((.((((.(((((.........)))))))))..))))))))).)))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAAGCTCAGGAGGGATAGCGCCATGGCGGGTCTTGAATCTTGATCTTCATTTGCGCTATCCATCCTGAGTTTC
dot-bracket secondary structure
)((((((((((.(((((((((.((((.(((((.........)))))))))..))))))))).)))))))))).
SIMILARITIES| miRBase gma-MIR390a: 8.0E-10 PMRD ath-miR390b: 5.0E-8 microPC miR390: 7.0E-35 | UniProt no hits RFAM 0MIR390: 3.0E-34 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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