ABOUT THIS RECORDspecies: Nicotiana tabacum
source: microPC, original name: miR159
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGACTGAAGGGAGCTC miRNA* GCTTCCTTCACCCACTCA mismatches: 3 bulges: 1 |
pre-miRNA
GAGCTTCCTTCACCCACTCATGGAGGAGAACTGGGGTTGAATTAGCTGCCGCCTCATTCATCCAACCACTCAGTAGAAAGGAATAGGTTTTGTGCTACTG
TGATTGAGTGAATGATGCGGGAGATAGTTTTCTATTCCTCTCTTTCCTTGCTTGGACTGAAGGGAGCTC
dot-bracket secondary structure
((((((((((((.(((..((.((((((((...(((((.((((((.((.((((.(((((((..(((.(((..(((((...((((....))))...))))))
)).)))..))))))).)))).)).))))))...))))))))).)))).))..)))..))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAGCTTCCTTCACCCACTCATGGAGGAGAACTGGGGTTGAATTAGCTGCCGCCTCATTCATCCAACCACTCAGTAGAAAGGAATAGGTTTTGTGCTACTG
TGATTGAGTGAATGATGCGGGAGATAGTTTTCTATTCCTCTCTTTCCTTGCTTGGACTGAAGGGAGCTC
dot-bracket secondary structure
((((((((((((.(((..((.((((((((...(((((.((((((.((.((((.(((((((..(((.(((..(((((...((((....))))...))))))
)).)))..))))))).)))).)).))))))...))))))))).)))).))..)))..))))))))))))
SIMILARITIES| miRBase ptc-MIR319f: 4e-17 PMRD ptc-miR319f: 4e-17 microPC miR319: 6e-93 | UniProt no hits RFAM MIR159: 5e-17 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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