ABOUT THIS RECORDspecies: Vitis vinifera
source: microPC, original name: miR159
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGACTGAAGGGAGCTC miRNA* GCTCCTTTGCAGCCCAAAAC mismatches: 1 bulges: 1 |
pre-miRNA
GGGCTCCTTTGCAGCCCAAAACAACTCCATCGCTGAAGAAGATGATGAACTTCATGCTCCTTGTTTTGGACTGAAGGGAGCTC
dot-bracket secondary structure
((((((((((.(((.(((((((((.......(((((((...........))))).))...))))))))).)))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGCTCCTTTGCAGCCCAAAACAACTCCATCGCTGAAGAAGATGATGAACTTCATGCTCCTTGTTTTGGACTGAAGGGAGCTC
dot-bracket secondary structure
((((((((((.(((.(((((((((.......(((((((...........))))).))...))))))))).)))))))))))))
SIMILARITIES| miRBase vvi-MIR319e: 1e-39 PMRD vvi-miR319e: 1e-39 microPC miR319: 6e-42 | UniProt no hits RFAM no hits |
Identical with: miR319 from microPC (MNEST045934) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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