ABOUT THIS RECORDspecies: Cichorium intybus
miRNA family: MIR169
source: microPC, original name: miR169
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* GGCAGTCTCCTTAGCTAA mismatches: 1 bulges: 2 |
pre-miRNA
TAGCCAAGGATGACTTGCCTGTTTCTTCTTTACCAAGGGTACTTGGTGTTCTTAAAGACCTTGTTTGGTTGGTTATCAGGCAGTCTCCTTAGCTAA
dot-bracket secondary structure
((((.(((((.((((.(((((.........(((((((....)))))))....(((.((((......))))..))).)))))))))))))).)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TAGCCAAGGATGACTTGCCTGTTTCTTCTTTACCAAGGGTACTTGGTGTTCTTAAAGACCTTGTTTGGTTGGTTATCAGGCAGTCTCCTTAGCTAA
dot-bracket secondary structure
((((.(((((.((((.(((((.........(((((((....)))))))....(((.((((......))))..))).)))))))))))))).)))).
SIMILARITIES| miRBase ath-MIR169m: 0.00000002 PMRD ath-miR169m: 0.00000002 microPC miR169: 1e-49 | UniProt no hits RFAM MIR169_5: 0.0000003 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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