ABOUT THIS RECORDspecies: Gossypium hirsutum
source: microPC, original name: miR482
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTGCCTACTCCACCCAT miRNA* GGGTGAGGGGGTAAGACA mismatches: 2 bulges: 1 |
pre-miRNA
ATGGGTGAGGGGGTAAGACAATGGACTGTTTCAGTCTTTTGGAAACAGAAATAAAGAAGAAGGCTGGTTTATGTCTTGCCTACTCCACCCAT
dot-bracket secondary structure
(((((((((..(((((((((.(((((.....((((((((((....))...........))))))))))))))))))))))..)).)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATGGGTGAGGGGGTAAGACAATGGACTGTTTCAGTCTTTTGGAAACAGAAATAAAGAAGAAGGCTGGTTTATGTCTTGCCTACTCCACCCAT
dot-bracket secondary structure
(((((((((..(((((((((.(((((.....((((((((((....))...........))))))))))))))))))))))..)).)))))))
SIMILARITIES| miRBase ghr-MIR482b: 3e-47 PMRD ghr-miR472: 3e-47 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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