ABOUT THIS RECORDspecies: Vitis vinifera
source: microPC, original name: miR171
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATTGAGCCGCGTCAATATC miRNA* TATTGGCGTGCCTCAATTTA mismatches: 1 bulges: 0 |
pre-miRNA
GGTATTGGCGTGCCTCAATTTAAAGACATGGTTAGATGAAGAGATATTAGCCATGTGATTTGATTGAGCCGCGTCAATATC
dot-bracket secondary structure
((((((((((((.(((((((.((..((((((((((((......)).))))))))))..)).))))))).))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGTATTGGCGTGCCTCAATTTAAAGACATGGTTAGATGAAGAGATATTAGCCATGTGATTTGATTGAGCCGCGTCAATATC
dot-bracket secondary structure
((((((((((((.(((((((.((..((((((((((((......)).))))))))))..)).))))))).))))))))))))
SIMILARITIES| miRBase vvi-MIR171b: 9e-41 PMRD vvi-miR171b: 9e-41 microPC miR171: 9e-41 | UniProt no hits RFAM MIR171_1: 2e-39 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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