ABOUT THIS RECORDspecies: Raphanus raphanistrum subsp. maritimus
source: microPC, original name: miR171
Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATTGAGCCGCGTCAATATC miRNA* TATTGGCCTGGTTCATTCAG mismatches: 2 bulges: 0 |
pre-miRNA
CGATATTGGCCTGGTTCATTCAGATCTTCCCGACCAAACCACGCAACAACTCTCTTAGATATCTGATTGAGCCGCGTCAATATC
dot-bracket secondary structure
)(((((((((.(((((((.((((((..((............................)).)))))).))))))).)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CGATATTGGCCTGGTTCATTCAGATCTTCCCGACCAAACCACGCAACAACTCTCTTAGATATCTGATTGAGCCGCGTCAATATC
dot-bracket secondary structure
)(((((((((.(((((((.((((((..((............................)).)))))).))))))).)))))))))
SIMILARITIES| miRBase bna-MIR171g: 6.0E-8 PMRD bna-miR171g: 6.0E-8 microPC miR171: 6.0E-42 | UniProt no hits RFAM 1MIR171_1: 4.0E-6 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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