ABOUT THIS RECORDspecies: Glycine max
source: microPC, original name: miR171
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGAGCCGCGTCAATATC miRNA* TATTGGCGTGCCTCAATTT mismatches: 1 bulges: 0 |
pre-miRNA
GGTATTGGCGTGCCTCAATTTGAAGACATGGTTAAGATGAAAACCAGCCATGTAATTTTAATTGAGCCGCGTCAATATC
dot-bracket secondary structure
((((((((((((.(((((((.(((.((((((((............))))))))..))).))))))).))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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GGTATTGGCGTGCCTCAATTTGAAGACATGGTTAAGATGAAAACCAGCCATGTAATTTTAATTGAGCCGCGTCAATATC
dot-bracket secondary structure
((((((((((((.(((((((.(((.((((((((............))))))))..))).))))))).))))))))))))
SIMILARITIES| miRBase vvi-MIR171b: 0.0000000002 PMRD gma-miR170n: 1e-39 microPC miR171: 0.0000000002 | UniProt no hits RFAM MIR171_1: 0.000000004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
