ABOUT THIS RECORDspecies: Nicotiana tabacum
source: microPC, original name: miR171
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGCCGCGCCAATATCAC miRNA* GATGTTGGTGAGGTTCAAT mismatches: 3 bulges: 0 |
pre-miRNA
GCGATGTTGGTGAGGTTCAATCCGAAGACGAGTTTACGTTTTGTTTTCGTAAAGAACGATCTCAGATTGAGCCGCGCCAATATCAC
dot-bracket secondary structure
..((((((((((.(((((((((((((((((((.......))))))))))....((......)).))))))))).))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
GCGATGTTGGTGAGGTTCAATCCGAAGACGAGTTTACGTTTTGTTTTCGTAAAGAACGATCTCAGATTGAGCCGCGCCAATATCAC
dot-bracket secondary structure
..((((((((((.(((((((((((((((((((.......))))))))))....((......)).))))))))).))))))))))..
SIMILARITIES| miRBase sly-MIR171d: 2e-29 PMRD sly-miR171d: 2e-29 microPC miR171: 1e-43 | UniProt no hits RFAM MIR171_1: 4e-28 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
