ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR169
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCC miRNA* CAGTCTCCTTGGCTAG mismatches: 0 bulges: 2 |
pre-miRNA
TAGCCAAGGATGACTTGCCTATTGTGCTCTTCTGAATGATGCAGTGCCATGATCAGTGTGGCCTGGCTGGTTCAGATGAGCCGAGATAGGCAGTCTCCTT
GGCTAG
dot-bracket secondary structure
((((((((((.((((.(((((((..((((.(((((((.(.((((.(((((.......))))))).))).))))))).))))...))))))))))))))))
))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TAGCCAAGGATGACTTGCCTATTGTGCTCTTCTGAATGATGCAGTGCCATGATCAGTGTGGCCTGGCTGGTTCAGATGAGCCGAGATAGGCAGTCTCCTT
GGCTAG
dot-bracket secondary structure
((((((((((.((((.(((((((..((((.(((((((.(.((((.(((((.......))))))).))).))))))).))))...))))))))))))))))
))))).
SIMILARITIES| miRBase osa-MIR169g: 2e-55 PMRD osa-miR169g: 2e-55 microPC miR169: 2e-55 | UniProt no hits RFAM MIR169_5: 3e-54 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
