ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR169
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGACAGACTTGCCGG miRNA* GGCAAGTCATCCTTGGCTG mismatches: 1 bulges: 1 |
pre-miRNA
TAGCCAAGGACAGACTTGCCGGCTAACTCCAAGGCGCTTCAGCAAAGCTGAGATTCCCCCAATACCAGGAGCCGGCAAGTCATCCTTGGCTG
dot-bracket secondary structure
((((((((((..((((((((((((........((...((((((...))))))...)).((.......)))))))))))))).))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TAGCCAAGGACAGACTTGCCGGCTAACTCCAAGGCGCTTCAGCAAAGCTGAGATTCCCCCAATACCAGGAGCCGGCAAGTCATCCTTGGCTG
dot-bracket secondary structure
((((((((((..((((((((((((........((...((((((...))))))...)).((.......)))))))))))))).))))))))))
SIMILARITIES| miRBase osa-MIR169c: 3e-47 PMRD osa-miRf10630-akr: 3e-47 microPC miR169: 1e-46 | UniProt no hits RFAM MIR169_2: 5e-46 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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