ABOUT THIS RECORDspecies: Saccharum officinarum
source: microPC, original name: miR167
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTGCCAGCATGATCT miRNA* GTCATGCTGTAGTTT mismatches: 0 bulges: 1 |
pre-miRNA
AAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCTGACTGTCACGGATCGATGAATCCAGGATGAGGG
GAGGGAATAATGAGCATCAGGTCATGCTGTAGTTT
dot-bracket secondary structure
(((((((.((((((((((((((..((((.((((.(.....).))))...)))).....(((((((((...((((..((((......))))..)))).)))
))))))........)))))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCTGACTGTCACGGATCGATGAATCCAGGATGAGGG
GAGGGAATAATGAGCATCAGGTCATGCTGTAGTTT
dot-bracket secondary structure
(((((((.((((((((((((((..((((.((((.(.....).))))...)))).....(((((((((...((((..((((......))))..)))).)))
))))))........)))))))))))))))))))))
SIMILARITIES| miRBase ssp-MIR167b: 1e-72 PMRD ssp-miR167: 1e-72 microPC miR167: 1e-72 | UniProt no hits RFAM MIR167_1: 0.0000000005 |
Identical with: ssp-MIR167b from miRBase (MNEST042469) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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