ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR169
source: microPC, original name: miR169
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTA miRNA* GGCAGTCACCTTGGCTA mismatches: 0 bulges: 2 |
pre-miRNA
TAGCCAAGGATGACTTGCCTATGTCTTCTTCCTCCCTCAGATGCCTAATTAGCCTTGGAGGTGTGGGGTCTCATGGGCAGTCACCTTGGCTA
dot-bracket secondary structure
(((((((((.(((((.(((((((.((((..(((((....((.((.......)).)))))))...))))...)))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TAGCCAAGGATGACTTGCCTATGTCTTCTTCCTCCCTCAGATGCCTAATTAGCCTTGGAGGTGTGGGGTCTCATGGGCAGTCACCTTGGCTA
dot-bracket secondary structure
(((((((((.(((((.(((((((.((((..(((((....((.((.......)).)))))))...))))...)))))))))))))))))))))
SIMILARITIES| miRBase far-MIR169: 3e-47 PMRD zma-miR169m: 0.0000003 microPC miR169: 3e-47 | UniProt no hits RFAM MIR169_5: 0.000005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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