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ABOUT THIS RECORD
ID:
MNEST045235
species:
Populus nigra
source:
microPC, original name:
miR1444
Taxonomy by NCBI:
Populus nigra
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CACATTCGGTCAATGTTC
miRNA*
ATATTGACCGAATATGGA
mismatches:
1
bulges:
0
View larger
pre-miRNA
GA
ATATTGACCGAATATGGA
TGAAAAGTTGTTCTCTGTTTCCTTTCCTC
CACATTCGGTCAATGTTC
dot-bracket secondary structure
((
(((((((((((((.((((
.((((.(..(........)..))))).))
)).)))))))))))))))
SIMILARITIES
miRBase
ptc-MIR1444a
:
1e-27
PMRD
ptc-miRf10526-akr
:
1e-27
microPC
miR1444
:
2e-32
UniProt
no hits
RFAM
MIR1444: 2e-26
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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