ABOUT THIS RECORDspecies: Vigna unguiculata
miRNA family: MIR156
source: microPC, original name: miR156
Taxonomy by NCBI:
Vigna unguiculata Vigna Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTTCTCTTTCTGTCA mismatches: 2 bulges: 2 |
pre-miRNA
TGACAGAAGAGAGTGAGCACACAGAGGCACCTGGTATAGTCATACACTGTTACTTTTGCGTGCTCACTTCTCTTTCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((.((((((.((...((((....))))...))..)))))).)))))))).)))).))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGACAGAAGAGAGTGAGCACACAGAGGCACCTGGTATAGTCATACACTGTTACTTTTGCGTGCTCACTTCTCTTTCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((.((((((.((...((((....))))...))..)))))).)))))))).)))).))))))).
SIMILARITIES| miRBase tcc-MIR156g: 2e-17 PMRD vvi-miR156b: 0.000000001 microPC miR156: 9e-41 | UniProt no hits RFAM mir-156: 0.00000000007 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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