ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR819
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTATAAGACTTTCTAGC miRNA* TAGAAAGTCTTATAA mismatches: 2 bulges: 0 |
pre-miRNA
TTATAAGACTTTCTAGCATTATCCATATTCATATATATGTTAATGAATCTAAACATATATGTGTCTATATTCATTAACATCTATATAAATATGGACNATA
CTAGAAAGTCTTATAA
dot-bracket secondary structure
.(((((((((((((((.....((((((((.(((((.((((((((((((.((.((((....)))).)).)))))))))))).))))).)))))))).....
))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
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TTATAAGACTTTCTAGCATTATCCATATTCATATATATGTTAATGAATCTAAACATATATGTGTCTATATTCATTAACATCTATATAAATATGGACNATA
CTAGAAAGTCTTATAA
dot-bracket secondary structure
.(((((((((((((((.....((((((((.(((((.((((((((((((.((.((((....)))).)).)))))))))))).))))).)))))))).....
))))))))))))))).
SIMILARITIES| miRBase osa-MIR819k: 2e-30 PMRD osa-miR819k: 2e-30 microPC miR819: 1e-59 | UniProt no hits RFAM MIR1122: 3e-29 |
MOREmiRNEST target predictions
non-miRNEST targets: none
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