ABOUT THIS RECORDspecies: Brassica napus
source: microPC, original name: miR156
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAAGAGAGTGAGCAC miRNA* GCTCACTGCTCTTTCTG mismatches: 0 bulges: 2 |
pre-miRNA
CAGAAGAGAGTGAGCACACAAAAGTAATCTGCATATACTGCATTTGCTTCTCTTGCGTGCTCACTGCTCTTTCTG
dot-bracket secondary structure
(((((((((((((((((.(((((((((..((((.....)))).))))))...))).))))))))).))).)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGAAGAGAGTGAGCACACAAAAGTAATCTGCATATACTGCATTTGCTTCTCTTGCGTGCTCACTGCTCTTTCTG
dot-bracket secondary structure
(((((((((((((((((.(((((((((..((((.....)))).))))))...))).))))))))).))).)))))
SIMILARITIES| miRBase bna-MIR156a: 3e-37 PMRD bna-miR156a: 3e-37 microPC miR156: 3e-37 | UniProt no hits RFAM mir-156: 7e-20 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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