ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR162
source: microPC, original name: miR162
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAGCCTCTGCATCCAG miRNA* GGGCGCAGTGGTTTATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
CTGGGCGCAGTGGTTTATCGATCTCTTCCCTGCCTTGTGCTGCTCCGATCGATGCCCGTGCTGATTCTTGATAATATACAACGCAGGAATCGATCGATAA
GCCTCTGCATCCAG
dot-bracket secondary structure
((((..((((.((((((((((((..((((.(((.(((((....((.(((((..((....)))))))...)).....))))).)))))))..)))))))))
))).))))..))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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deep sequencing data evidence
CTGGGCGCAGTGGTTTATCGATCTCTTCCCTGCCTTGTGCTGCTCCGATCGATGCCCGTGCTGATTCTTGATAATATACAACGCAGGAATCGATCGATAA
GCCTCTGCATCCAG
dot-bracket secondary structure
((((..((((.((((((((((((..((((.(((.(((((....((.(((((..((....)))))))...)).....))))).)))))))..)))))))))
))).))))..))))
SIMILARITIES| miRBase osa-MIR162b: 3e-60 PMRD osa-miR162m: 3e-60 microPC miR162: 4e-59 | UniProt no hits RFAM MIR162_2: 5e-59 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
