ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1428
source: microPC, original name: miR1428
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGATAATGCCGTGAATTTG miRNA* AATTCGCATGCCCTATCTTGTG mismatches: 3 bulges: 1 |
pre-miRNA
CGAATTCGCATGCCCTATCTTGTGGTATGAACTGAGCACACGATAATTTATGGTGCGTATTGGGGGCTTACAATAAGATAATGCCGTGAATTTG
dot-bracket secondary structure
(((((((((..((..((((((((.(((.(..((.(((.(((.(((...))).))).))..).))..).))).))))))))..)).)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CGAATTCGCATGCCCTATCTTGTGGTATGAACTGAGCACACGATAATTTATGGTGCGTATTGGGGGCTTACAATAAGATAATGCCGTGAATTTG
dot-bracket secondary structure
(((((((((..((..((((((((.(((.(..((.(((.(((.(((...))).))).))..).))..).))).))))))))..)).)))))))))
SIMILARITIES| miRBase osa-MIR1428c: 4e-28 PMRD osa-miR1428c: 4e-28 microPC miR1428: 5e-46 | UniProt no hits RFAM MIR1428: 3e-47 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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