ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR398
source: microPC, original name: miR398
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCT miRNA* GGGTGCCACCTAAGAACACAGG mismatches: 1 bulges: 2 |
pre-miRNA
TAGGGGTGCCACCTAAGAACACAGGTCATCCCTTAACCAAATAGCTTGTGTTCTCAGGTCACCCCT
dot-bracket secondary structure
)(((((((..((((.((((((((((..((...........))..)))))))))).)))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
TAGGGGTGCCACCTAAGAACACAGGTCATCCCTTAACCAAATAGCTTGTGTTCTCAGGTCACCCCT
dot-bracket secondary structure
)(((((((..((((.((((((((((..((...........))..)))))))))).)))))))))))
SIMILARITIES| miRBase gra-MIR398: 2.0E-31 PMRD ghr-miR398: 2.0E-31 microPC miR398: 2.0E-31 | UniProt no hits RFAM 8MIR398: 0.0002 |
Identical with: gra-MIR398 from miRBase (MNEST041078), ghr-MIR398 from miRBase , ghr-miR398 from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
