ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR398
source: microPC, original name: miR398
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCT miRNA* GGGTGCCACCTAAGAACACAGG mismatches: 1 bulges: 2 |
pre-miRNA
AGGGGTGCCACCTAAGAACACAGGTCATCCCTTAACCAAATAGCTTGTGTTCTCAGGTCACCCCT
dot-bracket secondary structure
(((((((..((((.((((((((((..((...........))..)))))))))).)))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGGGTGCCACCTAAGAACACAGGTCATCCCTTAACCAAATAGCTTGTGTTCTCAGGTCACCCCT
dot-bracket secondary structure
(((((((..((((.((((((((((..((...........))..)))))))))).)))))))))))
SIMILARITIES| miRBase gra-MIR398: 2e-31 PMRD ghr-miR398: 2e-31 microPC miR398: 2e-31 | UniProt no hits RFAM MIR398: 0.0002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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